Function reference
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new_CAN_data()
CAN_data
constructor
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new_DE_data()
DE_data
constructor
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new_GWAS_data()
GWAS_data
constructor
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validate_CAN_data()
- Checks validity of input for
CAN_data
constructor
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validate_DE_data()
- Checks validity of input for
DE_data
constructor
-
validate_GWAS_data()
- Checks validity of input for
GWAS_data
constructor
-
GWAS_data()
- Creates a
GWAS_data
object
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DE_data()
- Creates a
DE_data
object
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CAN_data()
- Creates a
CAN_data
object
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GWAS_data_from_gwaspoly()
- Extracts information from GWASpoly output
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compute_chrom_length()
- Computes chromosomes' length
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combine_chrom_length()
- Computes chromosomes' length from list
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.compute_chrom_length_genes()
- Computes chromosomes' length for a tibble of genes
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apply_threshold()
- Filters GWAS or DE results based on a threshold
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hidecan_plot()
- Wrapper to create a HIDECAN plot
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create_hidecan_plot()
- Creates a HIDECAN plot
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run_hidecan_shiny()
- Launches the HIDECAN shiny app
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hidecan_plot_from_gwaspoly()
- Creates a HIDECAN plot from GWASpoly output
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manhattan_plot()
- Creates a Manhattan plot
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get_example_data()
- Example dataset
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.check_cols()
- Checks whether some columns are present in a tibble